PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036423m
Common NameCISIN_1g036423mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 447aa    MW: 50187.1 Da    PI: 5.3566
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036423mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.4e-1284140155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  s+n+ ++k+   g ++ +e Aa+ ++ a++k++g
  orange1.1g036423m  84 SVYRGVTRHRWTGRFEAHLWDkGSWNNiQNKKGKQGAYDCEEAAARTYDLAALKYWG 140
                        78*******************9999**98855555********************98 PP

2AP252.81e-16183235156
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g+
  orange1.1g036423m 183 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYNTQEEAAAAYDMAAIEYRGA 235
                        89****99**********99966...3.6*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-984140IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1484150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-1185148IPR001471AP2/ERF domain
PROSITE profilePS5103218.03185148IPR001471AP2/ERF domain
SMARTSM003806.9E-1785154IPR001471AP2/ERF domain
PRINTSPR003672.8E-68697IPR001471AP2/ERF domain
CDDcd000186.37E-1786149No hitNo description
PfamPF008473.8E-12183234IPR001471AP2/ERF domain
CDDcd000183.10E-16183244No hitNo description
SuperFamilySSF541716.54E-18183244IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-18184242IPR001471AP2/ERF domain
PROSITE profilePS5103218.373184242IPR001471AP2/ERF domain
SMARTSM003801.7E-24184248IPR001471AP2/ERF domain
PRINTSPR003672.8E-6224244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MARSPASSCS SSSSSSFVGS EIVIVPHHHD DDHHRQVEKK PKIKRPRKKN DQPNNKEKCR  60
QKNVTISNNN NSISSNNNNS RRSSVYRGVT RHRWTGRFEA HLWDKGSWNN IQNKKGKQGA  120
YDCEEAAART YDLAALKYWG PETTLNFPIE TYKNDLEEMQ KASKEEYLAS LRRRSSGFSR  180
GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYNTQEE AAAAYDMAAI EYRGANAVTN  240
FDISHYIDQL KKKGIFPLPN SSMESEETEA EVEVEQPQPE QQQQQQTQPA LLPQQEEIVS  300
PHQQVLQQNT QLPSCMMDAS CAMAATDEHE LTWSFCLDTA VGLTPLTFPD IPMGNAGELP  360
DLFDNTGLFE DNIDFIFDVE AEEVSKYINE NNPEGNDNYT GNMEEEEEEN GNKLVVSRLL  420
SASSTSSNAS SPSSSTTTSV SCNYSV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.60480.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432555.10.0hypothetical protein CICLE_v10003896mg, partial
SwissprotQ6X5Y61e-121WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLA0A067E5860.0A0A067E586_CITSI; Uncharacterized protein
STRINGPOPTR_0010s25340.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.36e-92AP2 family protein